SubtiBank SubtiBank
kdgT [2019-05-02 17:56:28]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

kdgT [2019-05-02 17:56:28]

2-keto-3-deoxygluconate permease
locus
BSU22090
pI
8.94
mw
34.16 kDa
protein length
330 aa Sequence Blast
gene length
993 bp Sequence Blast
function
utilization of galacturonic acid
product
2-keto-3-deoxygluconate permease
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.3|Carbohydrate transporter]
  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.15|Utilization of hexuronate]
  • [category|SW 6|Groups of genes] → [category|SW 6.11|Efp-dependent proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    2,321,972 → 2,322,964

    The protein

    Protein family

  • sigma-70 factor family (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|891A32A19D1353BA566FF121BBCA7B986D31D129|kdgR]-[gene|8A0BB2BE0AAAA7FF834A4549E8E2AF343FB10571|kdgK]-[gene|826BFCE6ED2113BB0510E798C6CDB05C4665E0E2|kdgA]-[gene|EB6F40F8651654E0AB09447C5AD670C35A59F261|kdgT]
    description
    [Pubmed|9846747]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|9846747], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|891A32A19D1353BA566FF121BBCA7B986D31D129|KdgR]: repression, [Pubmed|9846747], in [regulon|891A32A19D1353BA566FF121BBCA7B986D31D129|KdgR regulon]
  • [protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA]: repression, [Pubmed|9846747], in [regulon|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA regulon]

    • regulation

  • induced by galacturonate ([protein|891A32A19D1353BA566FF121BBCA7B986D31D129|KdgR]) [Pubmed|9846747]
    • view in new tab

    additional information

  • [protein|search|translation] is likely to require [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] due to the presence of several consecutive proline residues [PubMed|23239624,23239623]

    • Biological materials

    Mutant

  • BKE22090 (Δ[gene|EB6F40F8651654E0AB09447C5AD670C35A59F261|kdgT]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE22090 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTGTGGATTCTCCCAT, downstream forward: _UP4_TGAATAAAAAGGCTGCCACA
  • BKK22090 (Δ[gene|EB6F40F8651654E0AB09447C5AD670C35A59F261|kdgT]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK22090 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTGTGGATTCTCCCAT, downstream forward: _UP4_TGAATAAAAAGGCTGCCACA

    • References

  • 9846747